Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs231430 chr17:3265138 T/C 0.000226 171 18.1 25.43 27.2 KM Plot
PCPG rs231431 chr17:3265905 C/T 0.000226 171 18.1 25.43 27.2 KM Plot
PCPG rs2315351 chr3:182474041 A/G 1.19E-5 174 13.27 25.85 25.53 KM Plot
PCPG rs2317343 chr6:123123683 G/A 1.46E-8 173 7.03 26.53 24.85 KM Plot
PCPG rs2323165 chr13:37569200 A/G 0.00031 176 4.17 24.47 25.87 KM Plot
PCPG rs2323393 chr13:37657072 C/A 0.000286 176 26.27 24.23 4.17 KM Plot
PCPG rs2327147 chr6:131710397 A/G 5.05E-7 178 15.33 27.78 24.85 KM Plot
PCPG rs2329552 chr22:21263551 C/T 2.42E-5 176 12.93 31.9 25.4 KM Plot
PCPG rs2358627 chr14:74631489 A/G 2.29E-5 175 25.4 26.92 10.43 KM Plot
PCPG rs2369488 chr16:1734655 T/C 1.43E-11 175 25.47 19.3 4.52 KM Plot
PCPG rs2371454 chr12:56647243 A/G 9.68E-8 178 0.8 29.13 25.17 KM Plot
PCPG rs2372447 chr3:80546259 T/C 6.02E-5 178 19.87 24.03 27.2 KM Plot
PCPG rs2372448 chr3:80546383 T/C 6.02E-5 178 19.87 24.03 27.2 KM Plot
PCPG rs2372654 chr3:80598175 T/C 0.00013 176 19.87 24.53 27.4 KM Plot
PCPG rs2372655 chr3:80598114 A/G 7.96E-5 174 19.53 24.03 27.4 KM Plot